OMAT5P113280
with_AGI_gene
0.74084799999999995102
<html><body><title>OMAT5P113280</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u501132800000i/OMAT5P113280.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u501132800000i/OMAT5P113280.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u501132800000i/OMAT5P113280.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300014800000i">OMAT3P001480</a></td><td>0.994818</td><td>-</td><td>AT3G04370</td><td>PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300007400000i">OMAT3P000740</a></td><td>0.992139</td><td>-</td><td>AT3G02610</td><td>acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200130100000i">OMAT2P013010</a></td><td>0.990012</td><td>-</td><td>AT2G46130</td><td>WRKY43</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301127500000i">OMAT3P112750</a></td><td>0.987621</td><td>-</td><td>AT3G53510</td><td>ABC transporter family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100110500000i">OMAT1P011050</a></td><td>0.987585</td><td>-</td><td>AT1G31670</td><td>copper amine oxidase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401044100000i">OMAT4P104410</a></td><td>0.986683</td><td>-</td><td>AT4G17718</td><td>Encodes a defensin-like (DEFL) family protein.</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200066100000i">OMAT2P006610</a></td><td>0.986454</td><td>-</td><td>AT2G29045</td><td>LCR62 (Low-molecular-weight cysteine-rich 62)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100169400000i">OMAT1P016940</a></td><td>0.986163</td><td>-</td><td>AT1G62210,AT1G62220</td><td>[AT1G62210]unknown protein, [AT1G62220]unknown protein</td><td>AT1G62214,AT1G62225</td><td>[AT1G62214]unknown pseudogene, [AT1G62225]unknown protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101162700000i">OMAT1P116270</a></td><td>0.986116</td><td>-</td><td>AT1G65880</td><td>BZO1 (BENZOYLOXYGLUCOSINOLATE 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201002300000i">OMAT2P100230</a></td><td>0.986099</td><td>-</td><td>AT2G01580</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101029900000i">OMAT1P102990</a></td><td>-0.624187</td><td>-</td><td>AT1G09620</td><td>ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500197600000i">OMAT5P019760</a></td><td>-0.612787</td><td>-</td><td>AT5G64300</td><td>ATGCH</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501011500000i">OMAT5P101150</a></td><td>-0.573932</td><td>-</td><td>AT5G04710</td><td>aspartyl aminopeptidase, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201067600000i">OMAT2P106760</a></td><td>-0.564095</td><td>-</td><td>AT2G31890</td><td>RAP</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501034000000i">OMAT5P103400</a></td><td>-0.560546</td><td>-</td><td>AT5G12120</td><td>ubiquitin-associated (UBA)/TS-N domain-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301116550000i">OMAT3P111655</a></td><td>-0.558686</td><td>-</td><td>AT3G50370</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501084800000i">OMAT5P108480</a></td><td>-0.557691</td><td>-</td><td>AT5G32470</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401116600000i">OMAT4P111660</a></td><td>-0.548898</td><td>-</td><td>AT4G38510</td><td>vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301014600000i">OMAT3P101460</a></td><td>-0.53884</td><td>-</td><td>AT3G04610</td><td>FLK (flowering locus KH domain)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401066700000i">OMAT4P106670</a></td><td>-0.538112</td><td>-</td><td>AT4G24770</td><td>RBP31 (31-KDA RNA BINDING PROTEIN)</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u501132800000i/OMAT5P113280-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.04e-07</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.04e-07 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0006629</td><td>lipid metabolic process</td><td>24/200</td><td>5.52</td><td>2.28e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006633</td><td>fatty acid biosynthetic process</td><td>11/200</td><td>15.12</td><td>1.06e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0008610</td><td>lipid biosynthetic process</td><td>17/200</td><td>7.74</td><td>1.07e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0044255</td><td>cellular lipid metabolic process</td><td>17/200</td><td>6.32</td><td>2.89e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0016053</td><td>organic acid biosynthetic process</td><td>15/200</td><td>6.93</td><td>7.12e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0006631</td><td>fatty acid metabolic process</td><td>11/200</td><td>9.63</td><td>2.05e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0043436</td><td>oxoacid metabolic process</td><td>19/200</td><td>4.32</td><td>2.20e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0006082</td><td>organic acid metabolic process</td><td>19/200</td><td>4.30</td><td>2.30e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0042180</td><td>cellular ketone metabolic process</td><td>19/200</td><td>4.23</td><td>3.00e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0044283</td><td>small molecule biosynthetic process</td><td>19/200</td><td>4.18</td><td>3.65e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0019748</td><td>secondary metabolic process</td><td>13/200</td><td>5.61</td><td>1.04e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0044281</td><td>small molecule metabolic process</td><td>25/200</td><td>2.78</td><td>1.22e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0033036</td><td>macromolecule localization</td><td>10/200</td><td>2.89</td><td>7.75e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0051252</td><td>regulation of RNA metabolic process</td><td>13/200</td><td>2.49</td><td>8.39e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0032774</td><td>RNA biosynthetic process</td><td>13/200</td><td>2.37</td><td>1.31e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0005975</td><td>carbohydrate metabolic process</td><td>12/200</td><td>2.30</td><td>2.38e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044249</td><td>cellular biosynthetic process</td><td>41/200</td><td>1.46</td><td>4.69e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009058</td><td>biosynthetic process</td><td>42/200</td><td>1.44</td><td>5.08e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0031326</td><td>regulation of cellular biosynthetic process</td><td>18/200</td><td>1.79</td><td>5.94e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009889</td><td>regulation of biosynthetic process</td><td>18/200</td><td>1.79</td><td>5.94e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006350</td><td>transcription</td><td>18/200</td><td>1.76</td><td>7.01e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006810</td><td>transport</td><td>18/200</td><td>1.76</td><td>7.31e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0051234</td><td>establishment of localization</td><td>18/200</td><td>1.75</td><td>7.53e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0080090</td><td>regulation of primary metabolic process</td><td>18/200</td><td>1.71</td><td>9.60e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>73/200</td><td>3.00</td><td>1.36e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>133/200</td><td>1.45</td><td>1.01e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0031224</td><td>intrinsic to membrane</td><td>11/200</td><td>2.05</td><td>8.07e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>31/200</td><td>3.68</td><td>8.89e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>34/200</td><td>2.37</td><td>8.39e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>34/200</td><td>2.37</td><td>8.39e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>31/200</td><td>2.28</td><td>5.27e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0003700</td><td>transcription factor activity</td><td>20/200</td><td>1.98</td><td>1.26e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>73/200</td><td>3.01</td><td>1.16e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>72/200</td><td>3.05</td><td>1.24e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>50/200</td><td>2.58</td><td>7.93e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>fatty</td><td>-</td><td>11/200</td><td>8.28</td><td>1.12e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>storage</td><td>-</td><td>10/200</td><td>8.80</td><td>2.28e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>35/200</td><td>2.66</td><td>3.21e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>process</td><td>-</td><td>45/200</td><td>2.20</td><td>1.18e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>petal</td><td>-</td><td>36/200</td><td>2.47</td><td>1.42e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>36/200</td><td>2.45</td><td>1.71e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>globular</td><td>-</td><td>16/200</td><td>4.26</td><td>2.73e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>36/200</td><td>2.38</td><td>3.44e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>lipid</td><td>-</td><td>15/200</td><td>4.37</td><td>4.29e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>16/200</td><td>3.99</td><td>6.87e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>29/200</td><td>2.52</td><td>1.42e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>13/200</td><td>4.35</td><td>2.17e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>biosynthetic</td><td>-</td><td>21/200</td><td>2.94</td><td>3.22e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>hypocotyl</td><td>-</td><td>11/200</td><td>4.71</td><td>4.59e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>alpha</td><td>-</td><td>19/200</td><td>2.60</td><td>4.79e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT5G51500&keyword=alpha">2.00E-100</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidoreductase</td><td>-</td><td>14/200</td><td>3.00</td><td>7.76e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>13/200</td><td>2.96</td><td>1.48e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>encodes</td><td>-</td><td>42/200</td><td>1.65</td><td>3.84e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>13/200</td><td>2.63</td><td>4.95e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>protease</td><td>-</td><td>10/200</td><td>2.99</td><td>5.89e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>16/200</td><td>2.19</td><td>1.12e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>putative</td><td>-</td><td>37/200</td><td>1.60</td><td>1.37e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>flower</td><td>-</td><td>16/200</td><td>2.09</td><td>1.82e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transport</td><td>-</td><td>19/200</td><td>1.95</td><td>1.89e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>catalytic</td><td>-</td><td>19/200</td><td>1.87</td><td>3.10e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>embryo</td><td>-</td><td>14/200</td><td>2.02</td><td>4.43e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>19/200</td><td>1.73</td><td>7.04e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>group</td><td>-</td><td>11/200</td><td>2.04</td><td>8.27e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>